# eix -S molecul
* sci-biology/biopython
     Available versions:  1.10 1.21 1.23 1.24 ~1.30 ~1.40b
     Installed:           no
     Homepage:            http://www.biopython.org
     Description:         Biopython - Python modules for computational molecular biology

* sci-biology/emboss
     Available versions:  2.9.0 ~2.10.0
     Installed:           no
     Homepage:            http://emboss.sourceforge.net/
     Description:         The European Molecular Biology Open Software Suite - A sequence analysis package

* sci-chemistry/babel
     Available versions:  1.6
     Installed:           no
     Homepage:            http://smog.com/chem/babel/
     Description:         Babel is a program to interconvert file formats used in molecular modeling.

* sci-chemistry/chemtool
     Available versions:  1.6.3 ~1.6.4 ~1.6.6
     Installed:           no
     Homepage:            http://ruby.chemie.uni-freiburg.de/~martin/chemtool/
     Description:         program for drawing organic molecules

* sci-chemistry/ghemical
     Available versions:  1.00 ~1.01
     Installed:           no
     Homepage:            http://www.uku.fi/~thassine/ghemical/
     Description:         Ghemical supports both quantum-mechanics (semi-empirical and ab initio) models and molecular mechanics models (there is an experimental Tripos 5.2-like force field for organic molecules). Also a tool for reduced protein models is included. Geometry optimization, molecular dynamics and a large set of visualization tools are currently available.

* sci-chemistry/gromacs
     Available versions:  3.2.1
     Installed:           no
     Homepage:            http://www.gromacs.org/
     Description:         The ultimate molecular dynamics simulation package

* sci-chemistry/molden
     Available versions:  ~3.9 4.0 4.1 ~4.3
     Installed:           no
     Homepage:            http://www.cmbi.kun.nl/~schaft/molden/molden.html
     Description:         Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac.

* sci-chemistry/moldy
     Available versions:  2.16e
     Installed:           no
     Homepage:            http://sal.kachinatech.com/Z/2/MOLDY.html
     Description:         Program for performing molecular dynamics simulations.

* sci-chemistry/openbabel
     Available versions:  1.100.2
     Installed:           no
     Homepage:            http://openbabel.sourceforge.net/
     Description:         Open Babel interconverts file formats used in molecular modeling.

* sci-chemistry/pymol
     Available versions:  0.88 0.90 ~0.95 0.97
     Installed:           no
     Homepage:            http://pymol.sourceforge.net/
     Description:         A Python-extensible molecular graphics system.

* sci-chemistry/rasmol
     Available versions:  2.7.2.1.1
     Installed:           no
     Homepage:            http://www.openrasmol.org/
     Description:         Free program that displays molecular structure.

* sci-chemistry/raster3d
     Available versions:  2.6e
     Installed:           no
     Homepage:            http://www.bmsc.washington.edu/raster3d/raster3d.html
     Description:         a set of tools for generating high quality raster images of proteins or other molecules

* sci-chemistry/xdrawchem
     Available versions:  1.7.8 1.8.4 1.8.5 1.9 ~1.9.2 ~1.9.3 ~1.9.4
     Installed:           no
     Homepage:            http://xdrawchem.sourceforge.net/
     Description:         Molecular structure drawing program